Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11686659	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11693506	1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs12053037	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12624008	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12999580	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs1543901	0.81[CHB][hapmap]
rs17011555	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17675373	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17726905	0.86[EUR][1000 genomes]
rs2420856	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2420865	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2420868	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs2421082	0.87[EUR][1000 genomes]
rs35545946	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4848242	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4848937	0.86[EUR][1000 genomes]
rs56204321	0.87[EUR][1000 genomes]
rs62172590	0.89[EUR][1000 genomes]
rs6722179	0.95[CEU][hapmap]
rs6745541	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7605769	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: