Variant report
| Variant | rs12999580 |
|---|---|
| Chromosome Location | chr2:125203956-125203957 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11686659 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11693506 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs12053037 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12618343 | 1.00[CEU][hapmap];0.81[JPT][hapmap] |
| rs12624008 | 0.88[EUR][1000 genomes] |
| rs1543901 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs17011555 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs17675373 | 0.87[EUR][1000 genomes] |
| rs17726905 | 0.87[EUR][1000 genomes] |
| rs2420856 | 0.84[JPT][hapmap] |
| rs2420865 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs2420868 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes] |
| rs2421082 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs35545946 | 0.88[EUR][1000 genomes] |
| rs4848242 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs4848937 | 0.87[EUR][1000 genomes] |
| rs56204321 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62172590 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6722179 | 0.94[CEU][hapmap] |
| rs6745541 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap] |
| rs7605769 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014610 | chr2:125124983-125350342 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834355 | chr2:125128585-125291043 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834356 | chr2:125141494-125315418 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
