Variant report

Variant	rs11896011
Chromosome Location	chr2:182637957-182637958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10181991	1.00[AMR][1000 genomes]
rs11887558	1.00[AMR][1000 genomes]
rs11890230	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898245	1.00[AMR][1000 genomes]
rs11903559	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13384392	1.00[AMR][1000 genomes]
rs13384479	1.00[AMR][1000 genomes]
rs13395789	1.00[AMR][1000 genomes]
rs13405727	1.00[AMR][1000 genomes]
rs13407143	1.00[AMR][1000 genomes]
rs13419020	1.00[AMR][1000 genomes]
rs16867501	1.00[AMR][1000 genomes]
rs73032631	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032655	1.00[AMR][1000 genomes]
rs73032661	1.00[AMR][1000 genomes]
rs73032669	1.00[AMR][1000 genomes]
rs73032673	1.00[AMR][1000 genomes]
rs73032699	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182635400-182639400	Weak transcription	Osteobl	bone
2	chr2:182635600-182639000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:182635600-182639200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:182635600-182639200	Weak transcription	Hela-S3	cervix
5	chr2:182636400-182639400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:182636400-182645800	Weak transcription	Pancreas	Pancrea
7	chr2:182636600-182638400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:182636600-182639200	Weak transcription	NHEK	skin
9	chr2:182636600-182639400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:182636600-182640600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:182637000-182638200	Weak transcription	HSMMtube	muscle
12	chr2:182637000-182639600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:182637400-182638400	Weak transcription	HMEC	breast
14	chr2:182637400-182639200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:182637600-182638000	Enhancers	Placenta	Placenta
16	chr2:182637800-182638200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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