Variant report

Variant	rs73032655
Chromosome Location	chr2:182711781-182711782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10181991	1.00[AMR][1000 genomes]
rs11887558	1.00[AMR][1000 genomes]
rs11890230	1.00[AMR][1000 genomes]
rs11894897	1.00[AMR][1000 genomes]
rs11896011	1.00[AMR][1000 genomes]
rs11898245	1.00[AMR][1000 genomes]
rs11903559	1.00[AMR][1000 genomes]
rs13384392	1.00[AMR][1000 genomes]
rs13384479	1.00[AMR][1000 genomes]
rs13395789	1.00[AMR][1000 genomes]
rs13405727	1.00[AMR][1000 genomes]
rs13407143	1.00[AMR][1000 genomes]
rs13419020	1.00[AMR][1000 genomes]
rs16867501	1.00[AMR][1000 genomes]
rs73032631	1.00[AMR][1000 genomes]
rs73032645	0.91[AFR][1000 genomes]
rs73032661	1.00[AMR][1000 genomes]
rs73032669	1.00[AMR][1000 genomes]
rs73032673	1.00[AMR][1000 genomes]
rs73032699	1.00[AMR][1000 genomes]
rs73038912	1.00[AMR][1000 genomes]
rs73038938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv834478	chr2:182654811-182843201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182703200-182717200	Weak transcription	Pancreas	Pancrea
2	chr2:182707000-182712800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:182709400-182713400	Enhancers	Brain Substantia Nigra	brain
4	chr2:182709600-182713000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:182709600-182714600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:182709800-182714400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:182710000-182712000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:182710000-182713000	Weak transcription	Brain Anterior Caudate	brain
9	chr2:182710400-182717800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:182710800-182712600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:182710800-182714200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:182710800-182714400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:182711200-182715200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:182711200-182715400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:182711400-182712000	Enhancers	Liver	Liver
16	chr2:182711400-182712000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr2:182711400-182712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:182711400-182712400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr2:182711400-182712800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:182711400-182713200	Enhancers	Brain Angular Gyrus	brain
21	chr2:182711400-182714600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr2:182711600-182712600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr2:182711600-182712800	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:182711600-182713200	Enhancers	Fetal Kidney	kidney

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