Variant report

Variant	rs73032661
Chromosome Location	chr2:182723250-182723251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182708164..182710679-chr2:182723157..182726321,3	MCF-7	breast:
2	chr2:182722925..182725534-chr2:182728109..182731664,3	K562	blood:
3	chr2:182720599..182723528-chr2:182741672..182744173,2	K562	blood:
4	chr2:182683295..182685054-chr2:182722947..182724931,2	MCF-7	breast:
5	chr2:182680132..182681845-chr2:182722990..182726056,3	MCF-7	breast:
6	chr2:182618261..182620386-chr2:182720885..182723855,2	MCF-7	breast:
7	chr2:182716953..182719682-chr2:182723057..182725244,2	K562	blood:
8	chr2:182702285..182703968-chr2:182722653..182724791,2	K562	blood:
9	chr2:182721202..182723661-chr2:182725499..182729283,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10181991	1.00[AMR][1000 genomes]
rs11887558	1.00[AMR][1000 genomes]
rs11890230	1.00[AMR][1000 genomes]
rs11894897	1.00[AMR][1000 genomes]
rs11896011	1.00[AMR][1000 genomes]
rs11898245	1.00[AMR][1000 genomes]
rs11903559	1.00[AMR][1000 genomes]
rs13384392	1.00[AMR][1000 genomes]
rs13384479	1.00[AMR][1000 genomes]
rs13395789	1.00[AMR][1000 genomes]
rs13405727	1.00[AMR][1000 genomes]
rs13407143	1.00[AMR][1000 genomes]
rs13419020	1.00[AMR][1000 genomes]
rs16867501	1.00[AMR][1000 genomes]
rs73032631	1.00[AMR][1000 genomes]
rs73032655	1.00[AMR][1000 genomes]
rs73032669	1.00[AMR][1000 genomes]
rs73032673	1.00[AMR][1000 genomes]
rs73032699	1.00[AMR][1000 genomes]
rs73038912	1.00[AMR][1000 genomes]
rs73038938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv834478	chr2:182654811-182843201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182718400-182723800	Weak transcription	Pancreas	Pancrea
2	chr2:182722000-182723800	Enhancers	NHEK	skin
3	chr2:182722400-182723600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:182722600-182723600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:182722600-182724000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:182722800-182724000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:182723000-182724800	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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