Variant report

Variant	rs11901438
Chromosome Location	chr2:189139485-189139486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:189131302..189133805-chr2:189136850..189139662,2	K562	blood:
2	chr2:189136881..189139630-chr2:189148262..189150658,2	K562	blood:
3	chr2:189136024..189140012-chr2:189145051..189148028,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10171308	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10185443	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10460383	1.00[JPT][hapmap]
rs10931345	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10931347	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11675685	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11680857	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11687797	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688935	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11902539	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12105671	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs12613686	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12693496	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4233800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4353610	0.87[ASN][1000 genomes]
rs4353611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4396678	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4446047	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4505490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs55901476	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61998215	0.92[EUR][1000 genomes]
rs62179630	0.91[EUR][1000 genomes]
rs62179642	0.91[EUR][1000 genomes]
rs62179644	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62179645	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62179646	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62179648	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62179650	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6434275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6434276	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6434279	1.00[JPT][hapmap]
rs6723034	1.00[JPT][hapmap]
rs6727073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6728462	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72903543	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72905541	0.95[ASN][1000 genomes]
rs72905544	0.95[ASN][1000 genomes]
rs72905553	0.95[ASN][1000 genomes]
rs72905582	0.87[ASN][1000 genomes]
rs72905599	0.87[ASN][1000 genomes]
rs7419883	0.82[CHB][hapmap];0.87[ASN][1000 genomes]
rs7557622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559636	1.00[JPT][hapmap]
rs7575702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7577484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7585851	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1811040	chr2:189119837-189150420	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189121800-189147800	Weak transcription	K562	blood
2	chr2:189131600-189140800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:189137200-189140200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:189137600-189139800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:189138400-189140400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:189138800-189142200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:189139000-189140200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:189139000-189140200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:189139000-189140400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:189139000-189140600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:189139000-189141600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:189139200-189140200	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links