Variant report

Variant	rs1190627
Chromosome Location	chr11:66096456-66096457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66056505..66058044-chr11:66095352..66097600,2	MCF-7	breast:
2	chr11:66081995..66084304-chr11:66094378..66096695,2	MCF-7	breast:
3	chr11:66076960..66082217-chr11:66092441..66098354,9	K562	blood:
4	chr11:66094720..66097587-chr11:66106532..66110928,4	K562	blood:
5	chr11:66044842..66048035-chr11:66092705..66097892,5	K562	blood:
6	chr11:66096036..66100735-chr11:66109250..66113337,6	K562	blood:
7	chr11:66089278..66092280-chr11:66092886..66097368,7	K562	blood:
8	chr11:66094091..66097272-chr11:66136875..66141085,5	MCF-7	breast:
9	chr11:66095661..66097663-chr11:66414195..66416836,2	K562	blood:
10	chr11:66081902..66085229-chr11:66094422..66097115,3	K562	blood:
11	chr11:66077971..66081865-chr11:66095901..66097502,3	MCF-7	breast:
12	chr11:66054084..66058324-chr11:66093357..66097768,5	K562	blood:
13	chr11:66089326..66092230-chr11:66092519..66097068,6	K562	blood:
14	chr11:66078974..66080569-chr11:66094751..66096474,22	MCF-7	breast:
15	chr11:66078330..66081708-chr11:66094461..66098902,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000174871	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000174669	Chromatin interaction
ENSG00000174807	Chromatin interaction
ENSG00000174744	Chromatin interaction
ENSG00000245156	Chromatin interaction
ENSG00000254458	Chromatin interaction
ENSG00000254452	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1039593	1.00[EUR][1000 genomes]
rs10750785	1.00[EUR][1000 genomes]
rs10750787	1.00[EUR][1000 genomes]
rs10791871	1.00[EUR][1000 genomes]
rs10791875	1.00[EUR][1000 genomes]
rs10791877	1.00[EUR][1000 genomes]
rs1189692	1.00[EUR][1000 genomes]
rs1190628	1.00[EUR][1000 genomes]
rs1190630	1.00[EUR][1000 genomes]
rs1203483	1.00[EUR][1000 genomes]
rs12281049	1.00[EUR][1000 genomes]
rs1320675	1.00[EUR][1000 genomes]
rs1532823	1.00[EUR][1000 genomes]
rs1566871	1.00[EUR][1000 genomes]
rs1621469	1.00[EUR][1000 genomes]
rs1700188	1.00[EUR][1000 genomes]
rs1784030	1.00[EUR][1000 genomes]
rs1784035	1.00[EUR][1000 genomes]
rs1785623	1.00[EUR][1000 genomes]
rs1785624	1.00[EUR][1000 genomes]
rs1785636	1.00[EUR][1000 genomes]
rs1791677	1.00[EUR][1000 genomes]
rs3016763	1.00[EUR][1000 genomes]
rs3132761	1.00[EUR][1000 genomes]
rs35599411	1.00[EUR][1000 genomes]
rs3850949	1.00[EUR][1000 genomes]
rs3867130	1.00[EUR][1000 genomes]
rs4290235	1.00[EUR][1000 genomes]
rs4930358	1.00[EUR][1000 genomes]
rs4930359	1.00[EUR][1000 genomes]
rs4930361	1.00[EUR][1000 genomes]
rs4930364	1.00[EUR][1000 genomes]
rs4930367	1.00[EUR][1000 genomes]
rs525698	1.00[EUR][1000 genomes]
rs7104297	1.00[EUR][1000 genomes]
rs7105162	1.00[EUR][1000 genomes]
rs7125100	1.00[EUR][1000 genomes]
rs7130857	1.00[EUR][1000 genomes]
rs7131396	1.00[EUR][1000 genomes]
rs71457730	1.00[EUR][1000 genomes]
rs908693	1.00[EUR][1000 genomes]
rs948359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	nsv897781	chr11:66095967-66116911	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66084600-66103200	Weak transcription	Small Intestine	intestine
2	chr11:66089200-66097600	Enhancers	NHLF	lung
3	chr11:66091400-66096600	Enhancers	Placenta	Placenta
4	chr11:66091600-66096600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:66091800-66096600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:66091800-66096600	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:66091800-66096600	Enhancers	Fetal Stomach	stomach
8	chr11:66091800-66096600	Enhancers	NH-A	brain
9	chr11:66091800-66097800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:66092200-66097000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:66092400-66097600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr11:66093000-66097600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:66093200-66096600	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:66093200-66096600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:66093200-66097000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:66093200-66102800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:66093600-66096600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:66094000-66096600	Flanking Active TSS	Hela-S3	cervix
19	chr11:66094400-66097000	Enhancers	Fetal Thymus	thymus
20	chr11:66094400-66102800	Weak transcription	Psoas Muscle	Psoas
21	chr11:66094800-66096600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:66095000-66102800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:66095200-66096600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:66095200-66096600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr11:66095400-66096600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:66095400-66096600	Enhancers	Fetal Lung	lung
27	chr11:66095400-66096600	Enhancers	Stomach Mucosa	stomach
28	chr11:66095400-66096600	Flanking Active TSS	HepG2	liver
29	chr11:66095400-66096600	Enhancers	NHEK	skin
30	chr11:66095600-66096600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:66095600-66096600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:66095600-66096600	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:66095600-66096600	Enhancers	GM12878-XiMat	blood
34	chr11:66095800-66100800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:66096000-66096600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:66096000-66096600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:66096200-66096600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:66096200-66096600	Enhancers	Muscle Satellite Cultured Cells	--
39	chr11:66096200-66096600	Enhancers	Spleen	Spleen
40	chr11:66096400-66096600	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr11:66096400-66096600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr11:66096400-66096600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr11:66096400-66096600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr11:66096400-66096600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:66096400-66096600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr11:66096400-66096600	Enhancers	Adipose Nuclei	Adipose
47	chr11:66096400-66096600	Enhancers	Brain Hippocampus Middle	brain
48	chr11:66096400-66096600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:66096400-66096600	Enhancers	Thymus	Thymus
50	chr11:66096400-66096600	Enhancers	A549	lung

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