Variant report

Variant	rs4930367
Chromosome Location	chr11:66179211-66179212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66178617..66182846-chr11:66233646..66237657,3	MCF-7	breast:
2	chr11:66139168..66140849-chr11:66177644..66179339,2	K562	blood:
3	chr11:66175058..66178321-chr11:66178866..66181551,3	K562	blood:

Variant related genes	Relation type
ENSG00000254510	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000174669	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1039593	1.00[EUR][1000 genomes]
rs10750785	1.00[EUR][1000 genomes]
rs10750787	1.00[EUR][1000 genomes]
rs10791871	1.00[EUR][1000 genomes]
rs10791875	1.00[EUR][1000 genomes]
rs10791877	1.00[EUR][1000 genomes]
rs1189692	1.00[EUR][1000 genomes]
rs1190627	1.00[EUR][1000 genomes]
rs1190628	1.00[EUR][1000 genomes]
rs1190630	1.00[EUR][1000 genomes]
rs1203483	1.00[EUR][1000 genomes]
rs12281049	1.00[EUR][1000 genomes]
rs1320675	1.00[EUR][1000 genomes]
rs1532823	1.00[EUR][1000 genomes]
rs1566871	1.00[EUR][1000 genomes]
rs1621469	1.00[EUR][1000 genomes]
rs1700188	1.00[EUR][1000 genomes]
rs1784030	1.00[EUR][1000 genomes]
rs1784035	1.00[EUR][1000 genomes]
rs1785623	1.00[EUR][1000 genomes]
rs1785624	1.00[EUR][1000 genomes]
rs1785636	1.00[EUR][1000 genomes]
rs1791677	1.00[EUR][1000 genomes]
rs3016763	1.00[EUR][1000 genomes]
rs3132761	1.00[EUR][1000 genomes]
rs35599411	1.00[EUR][1000 genomes]
rs3850949	1.00[EUR][1000 genomes]
rs3867130	1.00[EUR][1000 genomes]
rs4290235	1.00[EUR][1000 genomes]
rs4930358	1.00[EUR][1000 genomes]
rs4930359	1.00[EUR][1000 genomes]
rs4930361	1.00[EUR][1000 genomes]
rs4930364	1.00[EUR][1000 genomes]
rs495264	1.00[EUR][1000 genomes]
rs525698	1.00[EUR][1000 genomes]
rs580850	1.00[EUR][1000 genomes]
rs670900	1.00[EUR][1000 genomes]
rs7104297	1.00[EUR][1000 genomes]
rs7105162	1.00[EUR][1000 genomes]
rs7125100	1.00[EUR][1000 genomes]
rs7130857	1.00[EUR][1000 genomes]
rs7131396	1.00[EUR][1000 genomes]
rs71457730	1.00[EUR][1000 genomes]
rs908693	1.00[EUR][1000 genomes]
rs948359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66176600-66179800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr11:66177000-66179400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:66177000-66179400	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr11:66177000-66180200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:66177000-66180600	Weak transcription	Fetal Brain Male	brain
6	chr11:66177000-66181000	Weak transcription	Spleen	Spleen
7	chr11:66177000-66181800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:66177000-66183600	Weak transcription	Right Atrium	heart
9	chr11:66177200-66179600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:66177200-66180000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:66177200-66180000	Active TSS	Colon Smooth Muscle	Colon
12	chr11:66177200-66180600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:66177400-66180800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:66177400-66181000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:66177400-66185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:66177600-66180400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:66177600-66181400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:66177600-66184600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:66178000-66183000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:66178200-66179400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:66178200-66180200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:66178200-66180400	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr11:66178600-66179600	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:66178600-66179800	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr11:66178600-66180200	Bivalent/Poised TSS	Fetal Stomach	stomach
26	chr11:66178800-66179600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr11:66179000-66179400	Active TSS	Fetal Heart	heart
28	chr11:66179000-66179400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr11:66179000-66179400	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr11:66179000-66179800	Bivalent Enhancer	Fetal Brain Female	brain
31	chr11:66179000-66180000	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr11:66179200-66179400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:66179200-66179400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:66179200-66179400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr11:66179200-66179400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:66179200-66179400	Enhancers	Aorta	Aorta
37	chr11:66179200-66185200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links