Variant report

Variant	rs10791871
Chromosome Location	chr11:66123043-66123044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66122999..66125225-chr11:66125772..66127484,2	MCF-7	breast:
2	chr11:66102163..66104427-chr11:66120567..66123134,2	MCF-7	breast:
3	chr11:66103854..66118324-chr11:66119048..66141728,55	K562	blood:

Variant related genes	Relation type
ENSG00000174791	Chromatin interaction
ENSG00000255468	Chromatin interaction
ENSG00000174684	Chromatin interaction
ENSG00000174744	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1039593	1.00[EUR][1000 genomes]
rs10750785	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750787	1.00[EUR][1000 genomes]
rs10791875	1.00[EUR][1000 genomes]
rs10791877	1.00[EUR][1000 genomes]
rs1189692	1.00[EUR][1000 genomes]
rs1190626	1.00[TSI][hapmap]
rs1190627	1.00[EUR][1000 genomes]
rs1190628	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1190630	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1203483	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12281049	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1320675	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1344410	1.00[TSI][hapmap]
rs1532823	1.00[EUR][1000 genomes]
rs1566871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1621469	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1700188	1.00[EUR][1000 genomes]
rs1784030	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1784035	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1785623	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1785624	1.00[EUR][1000 genomes]
rs1785636	1.00[EUR][1000 genomes]
rs1791677	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2292123	1.00[TSI][hapmap]
rs3016763	1.00[EUR][1000 genomes]
rs3132761	1.00[EUR][1000 genomes]
rs35599411	1.00[EUR][1000 genomes]
rs3850949	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs3867130	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4290235	1.00[EUR][1000 genomes]
rs4930358	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4930359	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4930361	1.00[EUR][1000 genomes]
rs4930364	1.00[EUR][1000 genomes]
rs4930367	1.00[EUR][1000 genomes]
rs525698	1.00[EUR][1000 genomes]
rs6421643	1.00[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104297	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7105162	1.00[EUR][1000 genomes]
rs7125100	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130857	1.00[EUR][1000 genomes]
rs7131396	1.00[EUR][1000 genomes]
rs71457730	1.00[EUR][1000 genomes]
rs908693	1.00[EUR][1000 genomes]
rs948359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	nsv897784	chr11:66111901-66123043	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv897785	chr11:66112574-66123043	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10791871	CCDC85B	cis	lymphoblastoid	seeQTL

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66115800-66123400	Weak transcription	Ovary	ovary
2	chr11:66116000-66127200	Weak transcription	Gastric	stomach
3	chr11:66116000-66129400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:66116000-66129600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:66116000-66129600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:66116000-66134400	Weak transcription	Left Ventricle	heart
7	chr11:66116000-66135800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:66116000-66137200	Weak transcription	Fetal Kidney	kidney
9	chr11:66116000-66138400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:66116000-66138400	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:66116000-66138400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:66116000-66138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:66116200-66123400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:66116200-66127000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:66116200-66128800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:66116200-66128800	Weak transcription	Fetal Thymus	thymus
17	chr11:66116200-66129200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:66116200-66129200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:66116200-66129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:66116200-66129600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:66116200-66129800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:66116200-66130000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:66116200-66130200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:66116200-66137000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:66116200-66137400	Weak transcription	Brain Angular Gyrus	brain
26	chr11:66116200-66137400	Weak transcription	Brain Anterior Caudate	brain
27	chr11:66116200-66137800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:66116200-66138400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:66116400-66127800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:66116400-66128000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:66116600-66129000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr11:66116600-66129400	Weak transcription	Fetal Lung	lung
33	chr11:66116800-66129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:66116800-66130600	Weak transcription	Adipose Nuclei	Adipose
35	chr11:66116800-66137200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:66116800-66137400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:66116800-66138400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:66117000-66130200	Weak transcription	Spleen	Spleen
39	chr11:66117000-66132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:66117000-66138200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr11:66119000-66137800	Weak transcription	A549	lung
42	chr11:66121200-66129000	Weak transcription	Pancreas	Pancrea
43	chr11:66121400-66125600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:66121400-66138400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:66121800-66127200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:66121800-66129600	Weak transcription	Colonic Mucosa	Colon
47	chr11:66121800-66130200	Weak transcription	Thymus	Thymus
48	chr11:66121800-66138400	Weak transcription	Primary B cells from cord blood	blood
49	chr11:66122000-66127000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:66122000-66129000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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