Variant report

Variant	rs1566871
Chromosome Location	chr11:66134252-66134253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66096831..66099072-chr11:66133272..66136044,2	MCF-7	breast:
2	chr11:66100823..66106592-chr11:66129818..66135879,7	MCF-7	breast:
3	chr11:66133310..66136100-chr20:46287842..46289373,2	MCF-7	breast:
4	chr11:66102881..66107086-chr11:66131978..66137465,5	MCF-7	breast:
5	chr11:66108426..66118730-chr11:66133678..66141000,25	MCF-7	breast:
6	chr11:66133571..66134489-chr8:95731505..95732476,2	HCT-116	colon:
7	chr11:66103854..66118324-chr11:66119048..66141728,55	K562	blood:

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction
ENSG00000174791	Chromatin interaction
ENSG00000174744	Chromatin interaction
ENSG00000174684	Chromatin interaction
ENSG00000254756	Chromatin interaction
ENSG00000196562	Chromatin interaction
ENSG00000255468	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1039593	1.00[EUR][1000 genomes]
rs10750785	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10750787	1.00[EUR][1000 genomes]
rs10791871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10791875	1.00[EUR][1000 genomes]
rs10791877	1.00[EUR][1000 genomes]
rs1189692	1.00[EUR][1000 genomes]
rs1190627	1.00[EUR][1000 genomes]
rs1190628	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1190630	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1203483	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12281049	1.00[EUR][1000 genomes]
rs1320675	1.00[EUR][1000 genomes]
rs1532823	1.00[EUR][1000 genomes]
rs1621469	1.00[EUR][1000 genomes]
rs1700188	1.00[EUR][1000 genomes]
rs1784030	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1784035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1785623	1.00[EUR][1000 genomes]
rs1785624	1.00[EUR][1000 genomes]
rs1785636	1.00[EUR][1000 genomes]
rs1791677	1.00[EUR][1000 genomes]
rs3016763	1.00[EUR][1000 genomes]
rs3132761	1.00[EUR][1000 genomes]
rs35599411	1.00[EUR][1000 genomes]
rs3850949	1.00[EUR][1000 genomes]
rs3867130	1.00[EUR][1000 genomes]
rs4290235	1.00[EUR][1000 genomes]
rs4930358	1.00[EUR][1000 genomes]
rs4930359	1.00[EUR][1000 genomes]
rs4930361	1.00[EUR][1000 genomes]
rs4930364	1.00[EUR][1000 genomes]
rs4930367	1.00[EUR][1000 genomes]
rs525698	1.00[EUR][1000 genomes]
rs6421643	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104297	1.00[EUR][1000 genomes]
rs7105162	1.00[EUR][1000 genomes]
rs7125100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130857	1.00[EUR][1000 genomes]
rs7131396	1.00[EUR][1000 genomes]
rs71457730	1.00[EUR][1000 genomes]
rs908693	1.00[EUR][1000 genomes]
rs948359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66116000-66134400	Weak transcription	Left Ventricle	heart
2	chr11:66116000-66135800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:66116000-66137200	Weak transcription	Fetal Kidney	kidney
4	chr11:66116000-66138400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:66116000-66138400	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:66116000-66138400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:66116000-66138400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:66116200-66137000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:66116200-66137400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:66116200-66137400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:66116200-66137800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:66116200-66138400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:66116800-66137200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:66116800-66137400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:66116800-66138400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:66117000-66138200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr11:66119000-66137800	Weak transcription	A549	lung
18	chr11:66121400-66138400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:66121800-66138400	Weak transcription	Primary B cells from cord blood	blood
20	chr11:66122000-66137400	Strong transcription	Fetal Intestine Small	intestine
21	chr11:66126200-66136400	Strong transcription	Fetal Stomach	stomach
22	chr11:66127400-66137200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:66127400-66137400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr11:66127600-66137600	Weak transcription	NHEK	skin
25	chr11:66127800-66136000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:66128000-66137000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:66128200-66134400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:66128200-66137000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:66128200-66137200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:66128200-66138600	Weak transcription	Dnd41	blood
31	chr11:66128600-66135800	Weak transcription	Psoas Muscle	Psoas
32	chr11:66129000-66136000	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr11:66129200-66137000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:66129200-66137000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:66129600-66137000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:66129800-66137000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:66129800-66137200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:66130200-66134600	Strong transcription	K562	blood
39	chr11:66130200-66136600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:66130400-66134400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:66130600-66136200	Weak transcription	Fetal Thymus	thymus
42	chr11:66130800-66134400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:66131000-66134600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:66131000-66137400	Weak transcription	Colonic Mucosa	Colon
45	chr11:66131000-66138600	Weak transcription	Liver	Liver
46	chr11:66131400-66134400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:66131400-66134800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr11:66131400-66136000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:66131400-66138400	Weak transcription	Thymus	Thymus
50	chr11:66131600-66134800	Weak transcription	Right Ventricle	heart

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