Variant report

Variant	rs11906716
Chromosome Location	chr20:11002947-11002948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11905006	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11905962	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11906096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897645	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56940699	1.00[EUR][1000 genomes]
rs57151243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57207967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57684468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58293661	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58914333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59814948	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6033013	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60365154	1.00[EUR][1000 genomes]
rs6040310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6040312	1.00[EUR][1000 genomes]
rs6040313	1.00[EUR][1000 genomes]
rs60650685	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60680443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60935358	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61100742	1.00[EUR][1000 genomes]
rs61331134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61607264	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898021	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3425371	chr20:11001202-11003250	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10988400-11015600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:10996400-11007200	Weak transcription	Pancreas	Pancrea
3	chr20:11001000-11004400	Weak transcription	Fetal Lung	lung
4	chr20:11002400-11003000	Enhancers	HMEC	breast
5	chr20:11002600-11003000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:11002600-11003000	Enhancers	NHEK	skin

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