Variant report

Variant	rs733524
Chromosome Location	chr20:11006631-11006632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11905006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11905962	1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11906096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11906716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897645	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56940699	1.00[EUR][1000 genomes]
rs57151243	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57207967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57684468	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58293661	1.00[EUR][1000 genomes]
rs58914333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59814948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6033013	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60365154	1.00[EUR][1000 genomes]
rs6040310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6040312	1.00[EUR][1000 genomes]
rs6040313	1.00[EUR][1000 genomes]
rs60650685	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60680443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60935358	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61100742	1.00[EUR][1000 genomes]
rs61331134	1.00[AMR][1000 genomes]
rs61607264	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733522	1.00[ASW][hapmap];1.00[GIH][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733523	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898021	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898030	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs733524	DDX6	trans	brain	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10988400-11015600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:10996400-11007200	Weak transcription	Pancreas	Pancrea

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