Variant report

Variant	rs73898021
Chromosome Location	chr20:10999777-10999778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11905006	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11905962	1.00[EUR][1000 genomes]
rs11906096	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11906716	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907141	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907159	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907721	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56897645	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56940699	1.00[EUR][1000 genomes]
rs57151243	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57207967	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57684468	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58293661	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58914333	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59814948	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6033013	1.00[EUR][1000 genomes]
rs60365154	1.00[EUR][1000 genomes]
rs6040310	1.00[EUR][1000 genomes]
rs6040312	1.00[EUR][1000 genomes]
rs6040313	1.00[EUR][1000 genomes]
rs60650685	1.00[EUR][1000 genomes]
rs60680443	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60935358	1.00[EUR][1000 genomes]
rs61100742	1.00[EUR][1000 genomes]
rs61331134	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61607264	1.00[EUR][1000 genomes]
rs733522	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733523	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733524	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898030	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10988400-11015600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:10996400-11007200	Weak transcription	Pancreas	Pancrea
3	chr20:10996800-11000000	Enhancers	Fetal Lung	lung
4	chr20:10998800-10999800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:10999200-10999800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr20:10999400-10999800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr20:10999400-10999800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr20:10999400-10999800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:10999400-10999800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr20:10999400-10999800	Enhancers	Lung	lung
11	chr20:10999400-10999800	Enhancers	Right Atrium	heart
12	chr20:10999600-10999800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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