Variant report
| Variant | rs6040313 |
|---|---|
| Chromosome Location | chr20:11013651-11013652 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11905006 | 1.00[EUR][1000 genomes] |
| rs11905962 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11906096 | 1.00[EUR][1000 genomes] |
| rs11906716 | 1.00[EUR][1000 genomes] |
| rs11907141 | 1.00[EUR][1000 genomes] |
| rs11907159 | 1.00[EUR][1000 genomes] |
| rs11907721 | 1.00[EUR][1000 genomes] |
| rs56897645 | 1.00[EUR][1000 genomes] |
| rs56940699 | 1.00[EUR][1000 genomes] |
| rs57151243 | 1.00[EUR][1000 genomes] |
| rs57207967 | 1.00[EUR][1000 genomes] |
| rs57684468 | 1.00[EUR][1000 genomes] |
| rs58293661 | 1.00[EUR][1000 genomes] |
| rs58914333 | 1.00[EUR][1000 genomes] |
| rs59814948 | 1.00[EUR][1000 genomes] |
| rs6033013 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60365154 | 1.00[EUR][1000 genomes] |
| rs6040310 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6040312 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60650685 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60680443 | 1.00[EUR][1000 genomes] |
| rs60935358 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61100742 | 1.00[EUR][1000 genomes] |
| rs61607264 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs733522 | 1.00[EUR][1000 genomes] |
| rs733523 | 1.00[EUR][1000 genomes] |
| rs733524 | 1.00[EUR][1000 genomes] |
| rs73898021 | 1.00[EUR][1000 genomes] |
| rs73898030 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1065969 | chr20:10850562-11464172 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv544181 | chr20:10850562-11464172 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | esv2758513 | chr20:10892138-11116725 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2758781 | chr20:10892138-11116725 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv178660 | chr20:11010924-11019209 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv528348 | chr20:11013452-11014704 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:10988400-11015600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
