Variant report

Variant	rs11919424
Chromosome Location	chr3:141309602-141309603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141306187..141307753-chr3:141309119..141312322,3	K562	blood:
2	chr3:141299643..141301843-chr3:141308468..141311186,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11925986	1.00[AMR][1000 genomes]
rs11926237	1.00[AMR][1000 genomes]
rs59162381	1.00[AMR][1000 genomes]
rs73869663	1.00[AMR][1000 genomes]
rs73869667	1.00[AMR][1000 genomes]
rs73869676	1.00[AMR][1000 genomes]
rs73871834	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141254800-141319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:141255200-141320000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:141255400-141319200	Weak transcription	Aorta	Aorta
4	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
5	chr3:141272600-141319200	Strong transcription	Dnd41	blood
6	chr3:141275800-141320600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:141276400-141329400	Weak transcription	Small Intestine	intestine
8	chr3:141277200-141341400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:141277800-141312000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr3:141281800-141329400	Weak transcription	Fetal Brain Male	brain
11	chr3:141288000-141312400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:141288200-141320000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:141288400-141316400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr3:141288600-141316400	Strong transcription	Primary B cells from peripheral blood	blood
15	chr3:141289000-141311800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:141289000-141316600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:141289200-141316400	Strong transcription	Fetal Thymus	thymus
18	chr3:141293800-141319000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:141294800-141319200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:141295000-141319200	Weak transcription	Esophagus	oesophagus
21	chr3:141295200-141320000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr3:141295400-141314000	Weak transcription	Colonic Mucosa	Colon
23	chr3:141295600-141319600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:141295600-141320000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:141295800-141313000	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr3:141295800-141316400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:141295800-141320800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:141296000-141316000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:141296600-141312200	Strong transcription	Primary B cells from cord blood	blood
30	chr3:141296800-141310800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr3:141296800-141316400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:141296800-141316600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:141297000-141313600	Strong transcription	Primary T cells from cord blood	blood
34	chr3:141297400-141312400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:141297600-141316400	Strong transcription	Osteobl	bone
36	chr3:141297600-141325000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:141298000-141328400	Weak transcription	Hela-S3	cervix
38	chr3:141298600-141312600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:141298600-141326800	Weak transcription	Fetal Heart	heart
40	chr3:141299800-141321000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:141300200-141328800	Weak transcription	K562	blood
42	chr3:141300400-141310000	Weak transcription	Fetal Kidney	kidney
43	chr3:141300400-141319200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr3:141300600-141310000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr3:141300600-141310200	Weak transcription	Fetal Brain Female	brain
46	chr3:141300600-141314400	Weak transcription	Fetal Stomach	stomach
47	chr3:141300600-141319000	Weak transcription	Lung	lung
48	chr3:141300600-141319000	Weak transcription	Thymus	Thymus
49	chr3:141300600-141319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:141300600-141319200	Weak transcription	Pancreas	Pancrea

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