Variant report

Variant	rs73869663
Chromosome Location	chr3:141274809-141274810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141172263..141174697-chr3:141274621..141277258,2	MCF-7	breast:
2	chr3:141271506..141275087-chr3:141275367..141278539,3	K562	blood:
3	chr3:141204781..141208531-chr3:141274095..141278968,6	K562	blood:
4	chr3:141272702..141275087-chr3:141275367..141277933,2	K562	blood:
5	chr3:141173863..141176628-chr3:141274663..141277094,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11919424	1.00[AMR][1000 genomes]
rs11925986	1.00[AMR][1000 genomes]
rs11926237	1.00[AMR][1000 genomes]
rs59162381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014365	chr3:141235379-141282615	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141236200-141281600	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:141236400-141276000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:141236400-141301000	Weak transcription	Brain Substantia Nigra	brain
4	chr3:141236400-141306600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:141236600-141275800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:141236600-141297000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:141236600-141299400	Weak transcription	Gastric	stomach
8	chr3:141237000-141299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:141243400-141299400	Weak transcription	Spleen	Spleen
10	chr3:141246000-141278400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:141254600-141294400	Weak transcription	Esophagus	oesophagus
12	chr3:141254800-141275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:141254800-141291400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:141254800-141292200	Weak transcription	Left Ventricle	heart
15	chr3:141254800-141295200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:141254800-141299200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:141254800-141299400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:141254800-141299400	Weak transcription	Right Ventricle	heart
19	chr3:141254800-141319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:141255200-141304800	Weak transcription	Ovary	ovary
21	chr3:141255200-141320000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:141255400-141277200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:141255400-141319200	Weak transcription	Aorta	Aorta
24	chr3:141257000-141300200	Weak transcription	Pancreas	Pancrea
25	chr3:141258600-141275000	Weak transcription	HMEC	breast
26	chr3:141260000-141276600	Weak transcription	Hela-S3	cervix
27	chr3:141260800-141276400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:141261400-141278600	Weak transcription	NHLF	lung
29	chr3:141262600-141278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:141263600-141292000	Weak transcription	Colonic Mucosa	Colon
31	chr3:141263800-141288800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:141264000-141275000	Weak transcription	Brain Germinal Matrix	brain
33	chr3:141264000-141275800	Weak transcription	NH-A	brain
34	chr3:141264600-141275800	Weak transcription	Fetal Stomach	stomach
35	chr3:141265000-141290200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:141265200-141275600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:141265200-141283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
39	chr3:141266800-141275400	Weak transcription	A549	lung
40	chr3:141266800-141278600	Weak transcription	Brain Anterior Caudate	brain
41	chr3:141267000-141275800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr3:141267000-141289400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:141267000-141290200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr3:141267200-141276800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr3:141267400-141278600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:141267400-141295000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr3:141268200-141275800	Weak transcription	NHEK	skin
48	chr3:141268400-141297800	Weak transcription	Fetal Heart	heart
49	chr3:141269200-141294400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:141269400-141275000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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