Variant report

Variant	rs73871834
Chromosome Location	chr3:141299869-141299870
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141205878..141208438-chr3:141299317..141301173,2	K562	blood:
2	chr3:141299643..141301843-chr3:141308468..141311186,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11919424	1.00[AMR][1000 genomes]
rs11925986	1.00[AMR][1000 genomes]
rs11926237	1.00[AMR][1000 genomes]
rs59162381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869663	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869667	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1795799	chr3:141284383-141301451	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1794809	chr3:141290177-141304631	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141236400-141301000	Weak transcription	Brain Substantia Nigra	brain
2	chr3:141236400-141306600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:141254800-141319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:141255200-141304800	Weak transcription	Ovary	ovary
5	chr3:141255200-141320000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:141255400-141319200	Weak transcription	Aorta	Aorta
7	chr3:141257000-141300200	Weak transcription	Pancreas	Pancrea
8	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
9	chr3:141272600-141319200	Strong transcription	Dnd41	blood
10	chr3:141275800-141320600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:141276400-141329400	Weak transcription	Small Intestine	intestine
12	chr3:141277200-141341400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:141277800-141312000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:141281800-141329400	Weak transcription	Fetal Brain Male	brain
15	chr3:141288000-141312400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:141288200-141320000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:141288400-141316400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr3:141288600-141302800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:141288600-141308400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:141288600-141316400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr3:141289000-141311800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:141289000-141316600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:141289200-141309000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:141289200-141316400	Strong transcription	Fetal Thymus	thymus
25	chr3:141289400-141301600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:141290200-141301600	Strong transcription	NH-A	brain
27	chr3:141291000-141301200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr3:141292800-141300000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:141293800-141319000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:141294800-141319200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:141295000-141319200	Weak transcription	Esophagus	oesophagus
32	chr3:141295200-141300600	Strong transcription	NHEK	skin
33	chr3:141295200-141320000	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr3:141295400-141314000	Weak transcription	Colonic Mucosa	Colon
35	chr3:141295600-141319600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr3:141295600-141320000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:141295800-141301800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:141295800-141303600	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr3:141295800-141313000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr3:141295800-141316400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:141295800-141320800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:141296000-141316000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr3:141296200-141300400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:141296200-141309000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr3:141296400-141303800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr3:141296400-141307000	Strong transcription	Liver	Liver
47	chr3:141296400-141307600	Strong transcription	HSMM	muscle
48	chr3:141296600-141307400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr3:141296600-141312200	Strong transcription	Primary B cells from cord blood	blood
50	chr3:141296800-141300800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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