Variant report

Variant	rs73869667
Chromosome Location	chr3:141277933-141277934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141271506..141275087-chr3:141275367..141278539,3	K562	blood:
2	chr3:141204781..141208531-chr3:141274095..141278968,6	K562	blood:
3	chr3:141272702..141275087-chr3:141275367..141277933,2	K562	blood:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11919424	1.00[AMR][1000 genomes]
rs11925986	1.00[AMR][1000 genomes]
rs11926237	1.00[AMR][1000 genomes]
rs59162381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73871834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014365	chr3:141235379-141282615	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141236200-141281600	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:141236400-141301000	Weak transcription	Brain Substantia Nigra	brain
3	chr3:141236400-141306600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:141236600-141297000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:141236600-141299400	Weak transcription	Gastric	stomach
6	chr3:141237000-141299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:141243400-141299400	Weak transcription	Spleen	Spleen
8	chr3:141246000-141278400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:141254600-141294400	Weak transcription	Esophagus	oesophagus
10	chr3:141254800-141291400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:141254800-141292200	Weak transcription	Left Ventricle	heart
12	chr3:141254800-141295200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:141254800-141299200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:141254800-141299400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr3:141254800-141299400	Weak transcription	Right Ventricle	heart
16	chr3:141254800-141319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:141255200-141304800	Weak transcription	Ovary	ovary
18	chr3:141255200-141320000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:141255400-141319200	Weak transcription	Aorta	Aorta
20	chr3:141257000-141300200	Weak transcription	Pancreas	Pancrea
21	chr3:141261400-141278600	Weak transcription	NHLF	lung
22	chr3:141262600-141278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:141263600-141292000	Weak transcription	Colonic Mucosa	Colon
24	chr3:141263800-141288800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:141265000-141290200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:141265200-141283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
28	chr3:141266800-141278600	Weak transcription	Brain Anterior Caudate	brain
29	chr3:141267000-141289400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:141267000-141290200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr3:141267400-141278600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:141267400-141295000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr3:141268400-141297800	Weak transcription	Fetal Heart	heart
34	chr3:141269200-141294400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:141271200-141299400	Weak transcription	Brain Angular Gyrus	brain
36	chr3:141271600-141281400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:141272200-141280200	Strong transcription	HSMM	muscle
38	chr3:141272400-141291400	Weak transcription	GM12878-XiMat	blood
39	chr3:141272600-141319200	Strong transcription	Dnd41	blood
40	chr3:141272800-141285800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr3:141273200-141280600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
42	chr3:141273800-141280000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr3:141274400-141279800	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr3:141274800-141280400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
45	chr3:141275000-141279000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr3:141275200-141278000	Strong transcription	NHDF-Ad	bronchial
47	chr3:141275400-141278000	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr3:141275600-141281400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:141275800-141278000	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr3:141275800-141280000	Strong transcription	NH-A	brain

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