Variant report

Variant	rs11919973
Chromosome Location	chr3:177635407-177635408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11919642	1.00[ASW][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs16828802	0.84[ASW][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs2068607	0.81[EUR][1000 genomes]
rs2068608	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs57731768	0.81[EUR][1000 genomes]
rs727335	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs7622711	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177624400-177646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177635000-177635600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:177635000-177635800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:177635200-177635800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:177635400-177635600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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