Variant report

Variant	rs16828802
Chromosome Location	chr3:177661336-177661337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11919642	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11919973	0.81[EUR][1000 genomes]
rs16828839	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16828845	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1895071	0.80[AMR][1000 genomes]
rs2068607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068608	1.00[CEU][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57504101	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57731768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58265684	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61640172	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62283977	0.80[AMR][1000 genomes]
rs62283980	0.80[AMR][1000 genomes]
rs6774374	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs727335	1.00[CEU][hapmap];0.90[GIH][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs737554	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7622711	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177653600-177662200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:177660800-177662200	Enhancers	Dnd41	blood
3	chr3:177661000-177662200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:177661000-177662200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:177661000-177664000	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:177661000-177664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:177661200-177662000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:177661200-177662000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:177661200-177662200	Enhancers	Primary T cells from cord blood	blood
10	chr3:177661200-177662600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:177661200-177662800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:177661200-177663400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:177661200-177663800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:177661200-177664000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr3:177661200-177664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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