Variant report

Variant	rs11919642
Chromosome Location	chr3:177647633-177647634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11919973	0.83[AFR][1000 genomes]
rs16828802	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16828839	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16828845	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1895071	0.80[AMR][1000 genomes]
rs2068607	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2068608	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57504101	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57731768	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58265684	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61640172	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62283977	0.80[AMR][1000 genomes]
rs62283980	0.80[AMR][1000 genomes]
rs6774374	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs727335	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap]
rs737554	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7622711	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177638000-177649800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:177645600-177652000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:177646200-177647800	Enhancers	HMEC	breast
4	chr3:177646400-177651000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:177646600-177648000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:177646600-177648200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:177646600-177648400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:177646600-177648600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:177646600-177648800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:177646600-177649800	Weak transcription	A549	lung
11	chr3:177646600-177649800	Weak transcription	NH-A	brain
12	chr3:177646600-177650400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:177646800-177648200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:177646800-177652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:177647200-177648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:177647200-177650400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:177647200-177650400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:177647200-177651200	Weak transcription	HSMMtube	muscle
19	chr3:177647400-177648400	Weak transcription	Osteobl	bone
20	chr3:177647400-177648600	Weak transcription	HSMM	muscle
21	chr3:177647400-177648600	Weak transcription	NHEK	skin
22	chr3:177647400-177649000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:177647400-177649000	Weak transcription	Right Atrium	heart
24	chr3:177647400-177650200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:177647600-177648000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:177647600-177648000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:177647600-177648600	Weak transcription	NHDF-Ad	bronchial
28	chr3:177647600-177648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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