Variant report

Variant	rs62283977
Chromosome Location	chr3:177724502-177724503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11919642	0.80[AMR][1000 genomes]
rs16828802	0.80[AMR][1000 genomes]
rs1895071	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068607	0.80[AMR][1000 genomes]
rs2068608	0.80[AMR][1000 genomes]
rs57731768	0.80[AMR][1000 genomes]
rs61640172	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62283980	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283982	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177718400-177725000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:177720000-177724800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:177720000-177725200	Enhancers	Primary T cells from cord blood	blood
4	chr3:177722400-177724800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:177722600-177727400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:177722600-177727400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:177723000-177725000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:177723200-177724800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr3:177723200-177725000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:177723200-177725200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:177723400-177725000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:177723400-177725000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr3:177723400-177725400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr3:177723600-177727200	Weak transcription	Primary B cells from cord blood	blood
15	chr3:177724200-177724600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:177724400-177725000	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links