Variant report

Variant	rs61640172
Chromosome Location	chr3:177713043-177713044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11919642	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16828802	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16828839	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16828845	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1895071	0.84[AMR][1000 genomes]
rs2068607	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2068608	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57504101	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57731768	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58265684	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62283977	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62283980	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6774374	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs737554	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7622711	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177712600-177713400	Enhancers	Osteobl	bone
2	chr3:177712600-177713600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:177712600-177713800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr3:177712800-177713800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:177713000-177713200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:177713000-177714000	Enhancers	Primary T cells from cord blood	blood
7	chr3:177713000-177714000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr3:177713000-177714000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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