Variant report

Variant	rs6774374
Chromosome Location	chr3:177682600-177682601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11919642	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16828802	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16828839	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16828845	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2068607	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2068608	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57504101	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57731768	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58265684	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61640172	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs727335	1.00[CEU][hapmap]
rs737554	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7622711	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv997975	chr3:177664921-177719623	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177682400-177682800	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links