Variant report

Variant	rs57731768
Chromosome Location	chr3:177664740-177664741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11919642	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11919973	0.81[EUR][1000 genomes]
rs16828802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16828839	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16828845	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1895071	0.80[AMR][1000 genomes]
rs2068607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57504101	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58265684	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61640172	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62283977	0.80[AMR][1000 genomes]
rs62283980	0.80[AMR][1000 genomes]
rs6774374	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs727335	0.93[AFR][1000 genomes]
rs737554	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7622711	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177661200-177665800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:177662600-177666400	Weak transcription	Fetal Thymus	thymus
3	chr3:177663200-177664800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:177663200-177665400	Enhancers	Fetal Lung	lung
5	chr3:177663200-177666800	Weak transcription	Primary B cells from cord blood	blood
6	chr3:177663600-177665600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:177663800-177665400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:177663800-177666000	Enhancers	Adipose Nuclei	Adipose
9	chr3:177663800-177666000	Enhancers	Osteobl	bone
10	chr3:177663800-177666800	Weak transcription	Thymus	Thymus
11	chr3:177664000-177665400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:177664000-177666200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:177664000-177666400	Weak transcription	Dnd41	blood
14	chr3:177664200-177666000	Enhancers	Hela-S3	cervix
15	chr3:177664400-177664800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:177664400-177665200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:177664600-177665000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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