Variant report

Variant	rs62283980
Chromosome Location	chr3:177729222-177729223
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11919642	0.80[AMR][1000 genomes]
rs16828802	0.80[AMR][1000 genomes]
rs1895071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2068607	0.80[AMR][1000 genomes]
rs2068608	0.80[AMR][1000 genomes]
rs57731768	0.80[AMR][1000 genomes]
rs61640172	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62283977	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62283982	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv829805	chr3:177662113-177805003	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177726400-177729600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:177728800-177733400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:177729200-177733400	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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