Variant report

Variant	rs11921327
Chromosome Location	chr3:134398753-134398754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10935124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921150	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631603	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12634744	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637085	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639399	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1562487	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16841907	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197714	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28631653	0.81[ASN][1000 genomes]
rs6787929	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134395400-134401000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr3:134395600-134402000	Enhancers	Fetal Muscle Leg	muscle
3	chr3:134396200-134399800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:134396400-134399800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:134396600-134399200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:134396800-134398800	Weak transcription	Psoas Muscle	Psoas
7	chr3:134396800-134399000	Weak transcription	HSMMtube	muscle
8	chr3:134397000-134400200	Weak transcription	Osteobl	bone
9	chr3:134397000-134400600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:134397200-134399400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:134397800-134399200	Weak transcription	Right Ventricle	heart
12	chr3:134397800-134400200	Weak transcription	NHDF-Ad	bronchial
13	chr3:134397800-134401200	Weak transcription	Spleen	Spleen
14	chr3:134398200-134400600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:134398400-134399800	Weak transcription	Left Ventricle	heart
16	chr3:134398400-134400200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:134398600-134401000	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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