Variant report

Variant	rs6787929
Chromosome Location	chr3:134401141-134401142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10935124	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714557	0.81[EUR][1000 genomes]
rs11921150	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921327	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924192	0.80[EUR][1000 genomes]
rs12631603	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12634744	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637085	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639399	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1447696	0.84[EUR][1000 genomes]
rs1562483	0.82[EUR][1000 genomes]
rs1562487	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16841907	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841959	0.82[EUR][1000 genomes]
rs2197714	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28631653	0.81[ASN][1000 genomes]
rs6802542	0.82[EUR][1000 genomes]
rs73222791	0.81[EUR][1000 genomes]
rs73222793	0.82[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134395600-134402000	Enhancers	Fetal Muscle Leg	muscle
2	chr3:134397800-134401200	Weak transcription	Spleen	Spleen
3	chr3:134399000-134402000	Enhancers	HSMMtube	muscle
4	chr3:134399400-134402000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:134400000-134401800	Enhancers	Fetal Lung	lung
6	chr3:134400200-134401400	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:134400200-134401800	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr3:134400200-134401800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:134400200-134401800	Enhancers	NHDF-Ad	bronchial
10	chr3:134400200-134402000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:134400200-134402000	Enhancers	Osteobl	bone
12	chr3:134400400-134412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:134400600-134401400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:134400600-134404600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:134400800-134401400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:134400800-134404800	Weak transcription	Fetal Stomach	stomach
17	chr3:134401000-134404200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:134401000-134404400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:134401000-134404600	Weak transcription	Psoas Muscle	Psoas
20	chr3:134401000-134404800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:134401000-134404800	Weak transcription	Stomach Smooth Muscle	stomach

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