Variant report

Variant	rs10935124
Chromosome Location	chr3:134402106-134402107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11714557	0.81[EUR][1000 genomes]
rs11921150	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924192	0.80[EUR][1000 genomes]
rs12631603	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12634744	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637085	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639399	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1447696	0.84[EUR][1000 genomes]
rs1562483	0.82[EUR][1000 genomes]
rs1562487	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16841907	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841959	0.82[EUR][1000 genomes]
rs2197714	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28631653	0.81[ASN][1000 genomes]
rs6787929	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802542	0.82[EUR][1000 genomes]
rs73222791	0.81[EUR][1000 genomes]
rs73222793	0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10935124	RBP1	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134400400-134412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134400600-134404600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:134400800-134404800	Weak transcription	Fetal Stomach	stomach
4	chr3:134401000-134404200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:134401000-134404400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:134401000-134404600	Weak transcription	Psoas Muscle	Psoas
7	chr3:134401000-134404800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:134401000-134404800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:134401400-134404800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:134401400-134405000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:134401800-134404800	Weak transcription	NHDF-Ad	bronchial
12	chr3:134402000-134403400	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:134402000-134404400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:134402000-134404600	Weak transcription	Osteobl	bone
15	chr3:134402000-134404800	Weak transcription	HSMMtube	muscle
16	chr3:134402000-134411600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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