Variant report

Variant	rs1562483
Chromosome Location	chr3:134432930-134432931
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134424329..134427073-chr3:134431593..134433303,2	K562	blood:
2	chr3:134415377..134418042-chr3:134431451..134433591,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10935124	0.82[EUR][1000 genomes]
rs11712856	0.83[ASN][1000 genomes]
rs11714421	0.83[ASN][1000 genomes]
rs11714471	0.84[ASN][1000 genomes]
rs11714557	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11924192	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632055	0.85[ASN][1000 genomes]
rs12639399	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12695617	0.83[ASN][1000 genomes]
rs1447683	0.83[ASN][1000 genomes]
rs1447696	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1447698	0.90[ASN][1000 genomes]
rs1447699	0.90[ASN][1000 genomes]
rs1562487	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16841959	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2197714	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2400300	0.85[ASN][1000 genomes]
rs2400301	0.84[ASN][1000 genomes]
rs28631653	0.81[ASN][1000 genomes]
rs4383563	0.83[ASN][1000 genomes]
rs4955480	0.83[ASN][1000 genomes]
rs67368005	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6769903	0.83[ASN][1000 genomes]
rs6774239	0.80[ASN][1000 genomes]
rs6787929	0.82[EUR][1000 genomes]
rs6791061	0.83[ASN][1000 genomes]
rs6802542	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73222791	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73222793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73225024	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7428606	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7609580	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7619098	0.80[ASN][1000 genomes]
rs9289483	0.83[ASN][1000 genomes]
rs9851083	0.83[ASN][1000 genomes]
rs9866896	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528307	chr3:134431174-134433766	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134427800-134433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134431600-134433000	Enhancers	Psoas Muscle	Psoas
3	chr3:134432000-134436800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:134432200-134433000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:134432200-134437000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:134432400-134433000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:134432400-134433000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:134432400-134433400	Weak transcription	Esophagus	oesophagus
9	chr3:134432400-134437600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:134432600-134436600	Weak transcription	Osteobl	bone
11	chr3:134432600-134441400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:134432800-134433000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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