Variant report

Variant	rs12632055
Chromosome Location	chr3:134466789-134466790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11714557	0.87[ASN][1000 genomes]
rs11924192	0.84[ASN][1000 genomes]
rs1447696	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1447698	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1447699	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1562483	0.85[ASN][1000 genomes]
rs16841959	0.87[ASN][1000 genomes]
rs2400300	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67368005	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6774239	0.80[ASN][1000 genomes]
rs6802542	0.87[ASN][1000 genomes]
rs73222791	0.87[ASN][1000 genomes]
rs73222793	0.87[ASN][1000 genomes]
rs73225024	0.92[ASN][1000 genomes]
rs7428606	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134463600-134468800	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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