Variant report

Variant	rs2400301
Chromosome Location	chr3:134429672-134429673
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11712856	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11714421	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11714471	1.00[ASN][1000 genomes]
rs11714557	0.85[ASN][1000 genomes]
rs11924192	0.82[ASN][1000 genomes]
rs12695617	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13314516	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1447683	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1447695	0.91[ASN][1000 genomes]
rs1562483	0.84[ASN][1000 genomes]
rs16841959	0.85[ASN][1000 genomes]
rs1868166	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28631653	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4383563	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4955480	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67368005	0.85[ASN][1000 genomes]
rs6769903	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6774239	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6791061	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6802542	0.84[ASN][1000 genomes]
rs73222791	0.85[ASN][1000 genomes]
rs73222793	0.85[ASN][1000 genomes]
rs7615982	0.85[ASN][1000 genomes]
rs7619098	0.94[ASN][1000 genomes]
rs9289483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9819372	0.82[AMR][1000 genomes]
rs9850495	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9851083	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9866896	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134419800-134432200	Weak transcription	Esophagus	oesophagus
2	chr3:134426200-134430800	Enhancers	Osteobl	bone
3	chr3:134426400-134430400	Enhancers	Fetal Muscle Leg	muscle
4	chr3:134426600-134430600	Enhancers	NHDF-Ad	bronchial
5	chr3:134426800-134430400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:134426800-134430600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:134427400-134430600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:134427800-134433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:134428800-134430400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:134429000-134430000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:134429000-134430000	Weak transcription	Fetal Heart	heart
12	chr3:134429000-134430200	Weak transcription	HUVEC	blood vessel
13	chr3:134429200-134430000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:134429200-134430200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:134429200-134430200	Weak transcription	NHLF	lung
16	chr3:134429200-134430400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:134429400-134431600	Weak transcription	Psoas Muscle	Psoas
18	chr3:134429600-134430000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:134429600-134430000	Weak transcription	NH-A	brain
20	chr3:134429600-134431600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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