Variant report

Variant	rs16841907
Chromosome Location	chr3:134399888-134399889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10935124	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921150	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631603	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12634744	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637085	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12639399	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1562487	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2197714	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28631653	0.81[ASN][1000 genomes]
rs6787929	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134395400-134401000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr3:134395600-134402000	Enhancers	Fetal Muscle Leg	muscle
3	chr3:134397000-134400200	Weak transcription	Osteobl	bone
4	chr3:134397000-134400600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:134397800-134400200	Weak transcription	NHDF-Ad	bronchial
6	chr3:134397800-134401200	Weak transcription	Spleen	Spleen
7	chr3:134398200-134400600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:134398400-134400200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:134398600-134401000	Enhancers	Fetal Muscle Trunk	muscle
10	chr3:134398800-134401000	Enhancers	Psoas Muscle	Psoas
11	chr3:134399000-134402000	Enhancers	HSMMtube	muscle
12	chr3:134399200-134400000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:134399200-134400400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:134399400-134401000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:134399400-134402000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:134399600-134401000	Enhancers	Stomach Smooth Muscle	stomach
17	chr3:134399800-134400000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr3:134399800-134400400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:134399800-134400400	Enhancers	Fetal Brain Male	brain
20	chr3:134399800-134401000	Enhancers	Left Ventricle	heart
21	chr3:134399800-134401000	Enhancers	Right Ventricle	heart

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