Variant report
| Variant | rs11925457 |
|---|---|
| Chromosome Location | chr3:159083249-159083250 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:159078707..159080355-chr3:159081037..159083435,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11917412 | 1.00[YRI][hapmap] |
| rs11918908 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11919808 | 1.00[YRI][hapmap] |
| rs11922548 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11923368 | 1.00[AMR][1000 genomes] |
| rs2886480 | 1.00[YRI][hapmap] |
| rs34202807 | 0.87[AFR][1000 genomes] |
| rs58015192 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59583574 | 0.88[AFR][1000 genomes] |
| rs61243717 | 1.00[AMR][1000 genomes] |
| rs6441252 | 1.00[AMR][1000 genomes] |
| rs6778236 | 1.00[AMR][1000 genomes] |
| rs6810109 | 1.00[AMR][1000 genomes] |
| rs73874513 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73874515 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73877528 | 1.00[AMR][1000 genomes] |
| rs73877534 | 1.00[AMR][1000 genomes] |
| rs7610535 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
