Variant report

Variant	rs11934017
Chromosome Location	chr4:94667919-94667920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10516942	1.00[EUR][1000 genomes]
rs10516943	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11944682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020981	0.93[EUR][1000 genomes]
rs17020984	0.93[EUR][1000 genomes]
rs17020986	0.90[EUR][1000 genomes]
rs17020989	0.93[EUR][1000 genomes]
rs17020997	0.93[EUR][1000 genomes]
rs17021000	0.93[EUR][1000 genomes]
rs17021003	0.93[EUR][1000 genomes]
rs17021004	0.90[EUR][1000 genomes]
rs17021005	0.93[EUR][1000 genomes]
rs17021006	0.93[EUR][1000 genomes]
rs17021007	0.93[EUR][1000 genomes]
rs17021009	0.93[EUR][1000 genomes]
rs17021010	1.00[EUR][1000 genomes]
rs17021013	1.00[EUR][1000 genomes]
rs17021014	1.00[EUR][1000 genomes]
rs17021017	1.00[EUR][1000 genomes]
rs17021020	1.00[EUR][1000 genomes]
rs17021022	1.00[EUR][1000 genomes]
rs17021023	1.00[EUR][1000 genomes]
rs17021026	1.00[EUR][1000 genomes]
rs17021036	1.00[EUR][1000 genomes]
rs17021040	1.00[EUR][1000 genomes]
rs17021047	1.00[EUR][1000 genomes]
rs17021051	1.00[EUR][1000 genomes]
rs17021055	1.00[EUR][1000 genomes]
rs17021065	1.00[EUR][1000 genomes]
rs35036627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58485590	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6814829	0.93[EUR][1000 genomes]
rs6819079	1.00[EUR][1000 genomes]
rs6828900	0.93[EUR][1000 genomes]
rs6829522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875956	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72875964	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7672241	1.00[EUR][1000 genomes]
rs7673068	1.00[EUR][1000 genomes]
rs7680272	1.00[EUR][1000 genomes]
rs7691504	1.00[EUR][1000 genomes]
rs7691534	1.00[EUR][1000 genomes]
rs7696797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94654400-94669800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:94666200-94668000	Enhancers	Fetal Intestine Small	intestine
3	chr4:94666200-94668600	Enhancers	Fetal Intestine Large	intestine
4	chr4:94666400-94670000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:94666600-94669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:94667000-94669000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:94667400-94668000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:94667400-94669600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:94667400-94670600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:94667800-94669600	Weak transcription	GM12878-XiMat	blood

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