Variant report
| Variant | rs72875964 |
|---|---|
| Chromosome Location | chr4:94677859-94677860 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10516942 | 0.81[AMR][1000 genomes] |
| rs10516943 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11934017 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs11944682 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs17021036 | 0.81[AMR][1000 genomes] |
| rs17021040 | 0.81[AMR][1000 genomes] |
| rs17021047 | 0.81[AMR][1000 genomes] |
| rs17021051 | 0.81[AMR][1000 genomes] |
| rs17021055 | 0.81[AMR][1000 genomes] |
| rs17021065 | 0.81[AMR][1000 genomes] |
| rs17021087 | 1.00[EUR][1000 genomes] |
| rs35036627 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs35170307 | 1.00[EUR][1000 genomes] |
| rs58485590 | 0.96[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs6827506 | 0.95[EUR][1000 genomes] |
| rs6829522 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs72875956 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7672241 | 0.81[AMR][1000 genomes] |
| rs7673068 | 0.81[AMR][1000 genomes] |
| rs7680272 | 0.81[AMR][1000 genomes] |
| rs7691504 | 0.81[AMR][1000 genomes] |
| rs7691534 | 0.81[AMR][1000 genomes] |
| rs7696797 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008055 | chr4:94169131-95030074 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv931979 | chr4:94289958-95121723 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv821636 | chr4:94439636-95116590 | Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv1013018 | chr4:94526959-94735442 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:94670600-94684000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr4:94671200-94680000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
