Variant report

Variant	rs58485590
Chromosome Location	chr4:94663475-94663476
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10516942	1.00[EUR][1000 genomes]
rs10516943	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11934017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944682	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020981	0.93[EUR][1000 genomes]
rs17020984	0.93[EUR][1000 genomes]
rs17020986	0.90[EUR][1000 genomes]
rs17020989	0.93[EUR][1000 genomes]
rs17020997	0.93[EUR][1000 genomes]
rs17021000	0.93[EUR][1000 genomes]
rs17021003	0.93[EUR][1000 genomes]
rs17021004	0.90[EUR][1000 genomes]
rs17021005	0.93[EUR][1000 genomes]
rs17021006	0.93[EUR][1000 genomes]
rs17021007	0.93[EUR][1000 genomes]
rs17021009	0.93[EUR][1000 genomes]
rs17021010	1.00[EUR][1000 genomes]
rs17021013	1.00[EUR][1000 genomes]
rs17021014	1.00[EUR][1000 genomes]
rs17021017	1.00[EUR][1000 genomes]
rs17021020	1.00[EUR][1000 genomes]
rs17021022	1.00[EUR][1000 genomes]
rs17021023	1.00[EUR][1000 genomes]
rs17021026	1.00[EUR][1000 genomes]
rs17021036	1.00[EUR][1000 genomes]
rs17021040	1.00[EUR][1000 genomes]
rs17021047	1.00[EUR][1000 genomes]
rs17021051	1.00[EUR][1000 genomes]
rs17021055	1.00[EUR][1000 genomes]
rs17021065	1.00[EUR][1000 genomes]
rs35036627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6814829	0.93[EUR][1000 genomes]
rs6819079	1.00[EUR][1000 genomes]
rs6828900	0.93[EUR][1000 genomes]
rs6829522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875956	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72875964	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7672241	1.00[EUR][1000 genomes]
rs7673068	1.00[EUR][1000 genomes]
rs7680272	1.00[EUR][1000 genomes]
rs7691504	1.00[EUR][1000 genomes]
rs7691534	1.00[EUR][1000 genomes]
rs7696797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3353901	chr4:94661529-94663527	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94654400-94669800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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