Variant report

Variant	rs7680272
Chromosome Location	chr4:94655966-94655967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10516942	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11934017	1.00[EUR][1000 genomes]
rs11944682	1.00[EUR][1000 genomes]
rs17020981	0.93[EUR][1000 genomes]
rs17020984	0.93[EUR][1000 genomes]
rs17020986	0.90[EUR][1000 genomes]
rs17020989	0.93[EUR][1000 genomes]
rs17020997	0.93[EUR][1000 genomes]
rs17021000	0.93[EUR][1000 genomes]
rs17021003	0.93[EUR][1000 genomes]
rs17021004	0.90[EUR][1000 genomes]
rs17021005	0.93[EUR][1000 genomes]
rs17021006	0.93[EUR][1000 genomes]
rs17021007	0.93[EUR][1000 genomes]
rs17021009	0.93[EUR][1000 genomes]
rs17021010	1.00[EUR][1000 genomes]
rs17021013	1.00[EUR][1000 genomes]
rs17021014	1.00[EUR][1000 genomes]
rs17021017	1.00[EUR][1000 genomes]
rs17021020	1.00[EUR][1000 genomes]
rs17021022	1.00[EUR][1000 genomes]
rs17021023	1.00[EUR][1000 genomes]
rs17021026	1.00[EUR][1000 genomes]
rs17021036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021047	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021055	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021087	0.89[AMR][1000 genomes]
rs35036627	1.00[EUR][1000 genomes]
rs58485590	1.00[EUR][1000 genomes]
rs6814829	0.93[EUR][1000 genomes]
rs6819079	1.00[EUR][1000 genomes]
rs6828900	0.93[EUR][1000 genomes]
rs6829522	1.00[EUR][1000 genomes]
rs72875964	0.81[AMR][1000 genomes]
rs7672241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691504	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7691534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7696797	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94653400-94658200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:94653800-94656200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:94654400-94669800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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