Variant report

Variant	rs11936087
Chromosome Location	chr4:143883112-143883113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143881105..143883700-chr4:144027796..144029991,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10027917	1.00[EUR][1000 genomes]
rs10519676	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11931764	1.00[EUR][1000 genomes]
rs17017089	0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28431915	1.00[EUR][1000 genomes]
rs28536468	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28549779	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28565503	1.00[EUR][1000 genomes]
rs28605749	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28636716	1.00[EUR][1000 genomes]
rs28875577	1.00[EUR][1000 genomes]
rs60921637	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7683255	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes]
rs9996641	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143880200-143883400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr4:143880400-143884600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:143881200-143883600	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:143881200-143883800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:143881400-143883400	Enhancers	Colon Smooth Muscle	Colon
6	chr4:143881600-143883400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr4:143881800-143883400	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr4:143881800-143884400	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:143882400-143883200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:143882400-143883400	Enhancers	Brain Anterior Caudate	brain
11	chr4:143882400-143883800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr4:143882600-143883200	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:143882600-143883600	Weak transcription	Brain Substantia Nigra	brain
14	chr4:143882800-143883200	Weak transcription	Primary B cells from cord blood	blood
15	chr4:143882800-143883200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:143882800-143883400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:143882800-143883400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr4:143882800-143883400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:143882800-143883400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:143882800-143883400	Enhancers	Brain Cingulate Gyrus	brain
21	chr4:143882800-143883600	Enhancers	Brain Hippocampus Middle	brain
22	chr4:143883000-143883400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:143883000-143883400	Enhancers	Primary T cells from cord blood	blood
24	chr4:143883000-143883400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:143883000-143883400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:143883000-143883600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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