Variant report

Variant	rs10027917
Chromosome Location	chr4:143895825-143895826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10008314	1.00[EUR][1000 genomes]
rs10021800	1.00[EUR][1000 genomes]
rs10519676	1.00[EUR][1000 genomes]
rs11931764	1.00[EUR][1000 genomes]
rs11936087	1.00[EUR][1000 genomes]
rs17017089	1.00[EUR][1000 genomes]
rs28431915	1.00[EUR][1000 genomes]
rs28507672	1.00[EUR][1000 genomes]
rs28536468	1.00[EUR][1000 genomes]
rs28549779	1.00[EUR][1000 genomes]
rs28565503	1.00[EUR][1000 genomes]
rs28605749	1.00[EUR][1000 genomes]
rs28636716	1.00[EUR][1000 genomes]
rs28704746	1.00[EUR][1000 genomes]
rs28875577	1.00[EUR][1000 genomes]
rs60921637	1.00[EUR][1000 genomes]
rs6858246	1.00[AMR][1000 genomes]
rs7683255	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes]
rs9996641	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830102	chr4:143820268-143953611	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033285	chr4:143884298-144010784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv537288	chr4:143884298-144010784	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143895200-143897000	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:143895600-143896000	Enhancers	Stomach Smooth Muscle	stomach
3	chr4:143895800-143896000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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