Variant report

Variant	rs28704746
Chromosome Location	chr4:144113922-144113923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144110638..144113204-chr4:144113312..144116073,3	K562	blood:
2	chr4:144113802..144115480-chr4:144120114..144122276,2	K562	blood:
3	chr4:144104551..144108631-chr4:144110096..144114186,6	MCF-7	breast:
4	chr4:144110078..144112492-chr4:144112766..144115377,3	K562	blood:
5	chr4:144113102..144114943-chr4:144122155..144123861,2	K562	blood:

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10003936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007068	1.00[EUR][1000 genomes]
rs10008314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017771	1.00[EUR][1000 genomes]
rs10021800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027917	1.00[EUR][1000 genomes]
rs10050163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519676	1.00[EUR][1000 genomes]
rs11931764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947101	1.00[ASN][1000 genomes]
rs17017089	1.00[EUR][1000 genomes]
rs28375333	1.00[EUR][1000 genomes]
rs28412476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478042	1.00[EUR][1000 genomes]
rs28507672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28514400	1.00[EUR][1000 genomes]
rs28536468	1.00[EUR][1000 genomes]
rs28549779	1.00[EUR][1000 genomes]
rs28562579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605749	1.00[EUR][1000 genomes]
rs28636716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28655338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684892	1.00[EUR][1000 genomes]
rs28689042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28925889	1.00[ASN][1000 genomes]
rs28989231	1.00[ASN][1000 genomes]
rs300922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3196542	1.00[EUR][1000 genomes]
rs60921637	1.00[EUR][1000 genomes]
rs6822036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825700	1.00[EUR][1000 genomes]
rs6845309	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680827	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7683255	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144107200-144117600	Weak transcription	Spleen	Spleen
2	chr4:144107400-144117200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:144107400-144137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:144108000-144117200	Weak transcription	Gastric	stomach
5	chr4:144108200-144116800	Weak transcription	Left Ventricle	heart
6	chr4:144108200-144117200	Weak transcription	Pancreas	Pancrea
7	chr4:144108200-144117600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:144108200-144117600	Weak transcription	Esophagus	oesophagus
9	chr4:144108200-144119200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:144108200-144128200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:144108600-144116400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:144108600-144129200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:144109200-144116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:144109200-144116800	Weak transcription	Ovary	ovary
15	chr4:144109200-144117600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:144109200-144123800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:144109200-144142800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:144109400-144115000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:144109400-144115200	Strong transcription	Placenta	Placenta
20	chr4:144109600-144123000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:144109800-144117200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:144109800-144117800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr4:144109800-144138200	Strong transcription	Fetal Thymus	thymus
24	chr4:144110000-144116800	Weak transcription	Aorta	Aorta
25	chr4:144110000-144117400	Weak transcription	Colonic Mucosa	Colon
26	chr4:144110000-144126200	Weak transcription	Fetal Heart	heart
27	chr4:144110000-144128200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:144110000-144128400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:144110200-144122800	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:144110200-144136600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr4:144110200-144138000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:144110200-144145600	Weak transcription	Stomach Mucosa	stomach
33	chr4:144110400-144115000	Strong transcription	NH-A	brain
34	chr4:144110400-144117400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr4:144110400-144118000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:144110400-144118200	Weak transcription	Right Atrium	heart
37	chr4:144110400-144120800	Strong transcription	NHDF-Ad	bronchial
38	chr4:144110400-144123600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:144110600-144114000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:144110600-144117600	Weak transcription	Brain Angular Gyrus	brain
41	chr4:144110800-144117200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:144110800-144119200	Weak transcription	Right Ventricle	heart
43	chr4:144110800-144122800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:144110800-144127600	Strong transcription	HSMM	muscle
45	chr4:144110800-144133000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr4:144110800-144137400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:144111000-144114000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr4:144111000-144114000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr4:144111000-144115400	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr4:144111000-144123000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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