Variant report

Variant	rs9996641
Chromosome Location	chr4:144100520-144100521
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144097632..144100822-chr4:144104140..144107231,5	MCF-7	breast:
2	chr4:144095297..144098387-chr4:144099497..144101621,3	K562	blood:
3	chr4:144096235..144099412-chr4:144099530..144102386,3	K562	blood:
4	chr4:144085101..144086680-chr4:144098619..144100962,2	MCF-7	breast:
5	chr4:144099857..144101984-chr4:144103519..144106015,4	K562	blood:

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10003936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007068	1.00[EUR][1000 genomes]
rs10008314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017771	1.00[EUR][1000 genomes]
rs10021800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023498	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027917	1.00[EUR][1000 genomes]
rs10050163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519676	1.00[EUR][1000 genomes]
rs11931764	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936087	1.00[EUR][1000 genomes]
rs11947101	1.00[ASN][1000 genomes]
rs17017089	1.00[EUR][1000 genomes]
rs28375333	1.00[EUR][1000 genomes]
rs28412476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478042	1.00[EUR][1000 genomes]
rs28507672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28514400	1.00[EUR][1000 genomes]
rs28536468	1.00[EUR][1000 genomes]
rs28549779	1.00[EUR][1000 genomes]
rs28562579	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605749	1.00[EUR][1000 genomes]
rs28636716	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28655338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684892	1.00[EUR][1000 genomes]
rs28689042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28989231	1.00[ASN][1000 genomes]
rs300922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3196542	1.00[EUR][1000 genomes]
rs60921637	1.00[EUR][1000 genomes]
rs6822036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825700	1.00[EUR][1000 genomes]
rs6845309	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680827	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7683255	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:144096800-144104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144097600-144100600	ZNF genes & repeats	Fetal Lung	lung
4	chr4:144097600-144102200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr4:144097600-144103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:144097800-144104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
8	chr4:144098000-144102000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:144098000-144104400	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:144098200-144103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:144098400-144103600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:144098400-144104800	Weak transcription	HSMMtube	muscle
13	chr4:144098600-144104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:144098800-144100600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:144099000-144100800	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr4:144099200-144105400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:144099200-144105400	Weak transcription	Left Ventricle	heart
18	chr4:144099200-144105400	Weak transcription	Small Intestine	intestine
19	chr4:144099800-144100600	Weak transcription	Aorta	Aorta
20	chr4:144099800-144104800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:144100000-144100600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:144100000-144100600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:144100200-144105000	Weak transcription	Stomach Mucosa	stomach
24	chr4:144100200-144105000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr4:144100400-144100600	Enhancers	Duodenum Mucosa	Duodenum
26	chr4:144100400-144103400	Weak transcription	Primary T cells from cord blood	blood

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