Variant report
| Variant | rs7680827 |
|---|---|
| Chromosome Location | chr4:144195220-144195221 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:144171110..144173902-chr4:144193418..144195757,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10003936 | 1.00[ASN][1000 genomes] |
| rs10008314 | 1.00[ASN][1000 genomes] |
| rs10021800 | 1.00[ASN][1000 genomes] |
| rs10022882 | 1.00[ASN][1000 genomes] |
| rs10023498 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10050163 | 1.00[ASN][1000 genomes] |
| rs11931764 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11947101 | 1.00[ASN][1000 genomes] |
| rs28412476 | 1.00[ASN][1000 genomes] |
| rs28431915 | 1.00[ASN][1000 genomes] |
| rs28507672 | 1.00[ASN][1000 genomes] |
| rs28562579 | 1.00[ASN][1000 genomes] |
| rs28565503 | 1.00[ASN][1000 genomes] |
| rs28636716 | 1.00[ASN][1000 genomes] |
| rs28655338 | 1.00[ASN][1000 genomes] |
| rs28689042 | 1.00[ASN][1000 genomes] |
| rs28704746 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28875577 | 1.00[ASN][1000 genomes] |
| rs28925889 | 1.00[ASN][1000 genomes] |
| rs28989231 | 1.00[ASN][1000 genomes] |
| rs300922 | 1.00[ASN][1000 genomes] |
| rs6822036 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6845309 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6846288 | 1.00[ASN][1000 genomes] |
| rs9992969 | 1.00[ASN][1000 genomes] |
| rs9996641 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033902 | chr4:144114413-144285772 | Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv880177 | chr4:144174773-144214082 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:144194400-144195400 | Enhancers | NHEK | skin |
