Variant report

Variant	rs10050163
Chromosome Location	chr4:144149568-144149569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144148588..144150507-chr4:144152377..144155209,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10003936	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007068	1.00[EUR][1000 genomes]
rs10008314	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017771	1.00[EUR][1000 genomes]
rs10021800	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022882	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947101	1.00[ASN][1000 genomes]
rs28375333	1.00[EUR][1000 genomes]
rs28412476	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431915	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478042	1.00[EUR][1000 genomes]
rs28507672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28514400	1.00[EUR][1000 genomes]
rs28562579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565503	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636716	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28655338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684892	1.00[EUR][1000 genomes]
rs28689042	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28925889	1.00[ASN][1000 genomes]
rs28989231	1.00[ASN][1000 genomes]
rs300922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3196542	1.00[EUR][1000 genomes]
rs6822036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825700	1.00[EUR][1000 genomes]
rs6845309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846288	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680827	1.00[ASN][1000 genomes]
rs9992969	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144118400-144150000	Weak transcription	Aorta	Aorta
2	chr4:144125800-144155600	Weak transcription	Fetal Stomach	stomach
3	chr4:144135200-144151400	Weak transcription	Lung	lung
4	chr4:144135800-144151400	Weak transcription	Left Ventricle	heart
5	chr4:144135800-144153400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:144136000-144149600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:144136000-144149600	Weak transcription	Thymus	Thymus
8	chr4:144136400-144151600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:144137000-144150800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:144142800-144151200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:144143200-144151200	Weak transcription	GM12878-XiMat	blood
12	chr4:144144400-144154600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:144144800-144151200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:144146000-144151200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:144146000-144151600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr4:144146600-144160800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:144146800-144149600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:144146800-144151200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:144146800-144153600	Weak transcription	Stomach Mucosa	stomach
20	chr4:144147200-144149800	Weak transcription	Primary T cells from cord blood	blood
21	chr4:144148200-144153400	Weak transcription	Fetal Intestine Small	intestine
22	chr4:144148200-144153600	Weak transcription	Fetal Intestine Large	intestine

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