Variant report

Variant	rs6825700
Chromosome Location	chr4:144247984-144247985
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10003936	1.00[EUR][1000 genomes]
rs10007068	1.00[EUR][1000 genomes]
rs10008314	1.00[EUR][1000 genomes]
rs10017771	1.00[EUR][1000 genomes]
rs10021800	1.00[EUR][1000 genomes]
rs10022882	1.00[EUR][1000 genomes]
rs10023498	1.00[EUR][1000 genomes]
rs10050163	1.00[EUR][1000 genomes]
rs11931764	1.00[EUR][1000 genomes]
rs28375333	1.00[EUR][1000 genomes]
rs28412476	1.00[EUR][1000 genomes]
rs28431915	1.00[EUR][1000 genomes]
rs28478042	1.00[EUR][1000 genomes]
rs28507672	1.00[EUR][1000 genomes]
rs28514400	1.00[EUR][1000 genomes]
rs28562579	1.00[EUR][1000 genomes]
rs28565503	1.00[EUR][1000 genomes]
rs28636716	1.00[EUR][1000 genomes]
rs28655338	1.00[EUR][1000 genomes]
rs28684892	1.00[EUR][1000 genomes]
rs28689042	1.00[EUR][1000 genomes]
rs28704746	1.00[EUR][1000 genomes]
rs28875577	1.00[EUR][1000 genomes]
rs300922	1.00[EUR][1000 genomes]
rs3196542	1.00[EUR][1000 genomes]
rs6822036	1.00[EUR][1000 genomes]
rs6845309	1.00[EUR][1000 genomes]
rs6846288	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes]
rs9996641	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3332574	chr4:144239396-144259577	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
3	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144247600-144250200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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