Variant report

Variant	rs10007068
Chromosome Location	chr4:144306482-144306483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144296543..144298998-chr4:144305325..144308009,2	K562	blood:
2	chr4:144305860..144307696-chr4:144310881..144312432,2	MCF-7	breast:
3	chr4:144300243..144304529-chr4:144305070..144308118,4	K562	blood:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10003936	1.00[EUR][1000 genomes]
rs10008314	1.00[EUR][1000 genomes]
rs10017771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021800	1.00[EUR][1000 genomes]
rs10022882	1.00[EUR][1000 genomes]
rs10023498	1.00[EUR][1000 genomes]
rs10050163	1.00[EUR][1000 genomes]
rs28375333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28412476	1.00[EUR][1000 genomes]
rs28478042	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28507672	1.00[EUR][1000 genomes]
rs28514400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562579	1.00[EUR][1000 genomes]
rs28565503	1.00[EUR][1000 genomes]
rs28655338	1.00[EUR][1000 genomes]
rs28684892	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28689042	1.00[EUR][1000 genomes]
rs28704746	1.00[EUR][1000 genomes]
rs300922	1.00[EUR][1000 genomes]
rs3196542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822036	1.00[EUR][1000 genomes]
rs6825700	1.00[EUR][1000 genomes]
rs6845309	1.00[EUR][1000 genomes]
rs6846288	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes]
rs9996641	1.00[EUR][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144300200-144307000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:144301600-144307800	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:144302200-144307000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:144302200-144307000	Enhancers	NHDF-Ad	bronchial
5	chr4:144302800-144308000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
7	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:144303000-144318000	Weak transcription	HSMM	muscle
9	chr4:144303200-144308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
11	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:144303200-144317800	Weak transcription	Gastric	stomach
13	chr4:144303400-144308600	Weak transcription	HepG2	liver
14	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
17	chr4:144303800-144307200	Enhancers	Fetal Lung	lung
18	chr4:144303800-144308600	Weak transcription	Fetal Brain Female	brain
19	chr4:144304000-144307600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:144304000-144307800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:144304000-144308600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
25	chr4:144304200-144306600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:144304200-144306800	Enhancers	Primary B cells from cord blood	blood
27	chr4:144304200-144307200	Enhancers	Brain Cingulate Gyrus	brain
28	chr4:144304200-144308400	Weak transcription	Stomach Mucosa	stomach
29	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:144304400-144306600	Weak transcription	Fetal Kidney	kidney
31	chr4:144304400-144307800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:144304400-144308400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:144304400-144309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:144304600-144307600	Weak transcription	Fetal Intestine Large	intestine
36	chr4:144304600-144307600	Weak transcription	Fetal Intestine Small	intestine
37	chr4:144304600-144307800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:144304600-144308600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:144304600-144310000	Weak transcription	HMEC	breast
40	chr4:144304600-144310000	Weak transcription	NHEK	skin
41	chr4:144304600-144311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
43	chr4:144304600-144317000	Weak transcription	K562	blood
44	chr4:144305000-144306800	Enhancers	NHLF	lung
45	chr4:144305200-144306600	Enhancers	Adipose Nuclei	Adipose
46	chr4:144305200-144306800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:144305200-144310200	Weak transcription	Liver	Liver
48	chr4:144305200-144311000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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