Variant report

Variant	rs3196542
Chromosome Location	chr4:144304436-144304437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144294005..144295749-chr4:144303829..144305469,2	K562	blood:
2	chr4:144278484..144280281-chr4:144303228..144305385,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10003936	1.00[EUR][1000 genomes]
rs10007068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10008314	1.00[EUR][1000 genomes]
rs10017771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021800	1.00[EUR][1000 genomes]
rs10022882	1.00[EUR][1000 genomes]
rs10023498	1.00[EUR][1000 genomes]
rs10050163	1.00[EUR][1000 genomes]
rs28375333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28412476	1.00[EUR][1000 genomes]
rs28478042	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28507672	1.00[EUR][1000 genomes]
rs28514400	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28562579	1.00[EUR][1000 genomes]
rs28565503	1.00[EUR][1000 genomes]
rs28655338	1.00[EUR][1000 genomes]
rs28684892	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28689042	1.00[EUR][1000 genomes]
rs28704746	1.00[EUR][1000 genomes]
rs300922	1.00[EUR][1000 genomes]
rs6822036	1.00[EUR][1000 genomes]
rs6825700	1.00[EUR][1000 genomes]
rs6845309	1.00[EUR][1000 genomes]
rs6846288	1.00[EUR][1000 genomes]
rs9992969	1.00[EUR][1000 genomes]
rs9996641	1.00[EUR][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144296800-144304600	Enhancers	Liver	Liver
2	chr4:144297200-144305600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:144298000-144305800	Enhancers	Fetal Stomach	stomach
4	chr4:144299000-144304600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:144300200-144307000	Enhancers	Colon Smooth Muscle	Colon
6	chr4:144301000-144305000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:144301200-144305200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:144301600-144304600	Enhancers	Duodenum Mucosa	Duodenum
9	chr4:144301600-144304600	Enhancers	GM12878-XiMat	blood
10	chr4:144301600-144307800	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:144301800-144304600	Enhancers	Fetal Intestine Large	intestine
12	chr4:144301800-144306000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr4:144302000-144304600	Enhancers	K562	blood
14	chr4:144302000-144305800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr4:144302200-144304600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:144302200-144304600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:144302200-144304600	Enhancers	Psoas Muscle	Psoas
18	chr4:144302200-144304600	Enhancers	Small Intestine	intestine
19	chr4:144302200-144304600	Enhancers	NHEK	skin
20	chr4:144302200-144307000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:144302200-144307000	Enhancers	NHDF-Ad	bronchial
22	chr4:144302400-144304600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:144302600-144304600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:144302600-144304800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:144302600-144305600	Weak transcription	Esophagus	oesophagus
26	chr4:144302600-144305600	Weak transcription	Spleen	Spleen
27	chr4:144302800-144304600	Enhancers	Fetal Intestine Small	intestine
28	chr4:144302800-144305000	Weak transcription	Lung	lung
29	chr4:144302800-144305600	Weak transcription	Left Ventricle	heart
30	chr4:144302800-144308000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
32	chr4:144303000-144305200	Enhancers	Primary hematopoietic stem cells	blood
33	chr4:144303000-144305600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr4:144303000-144318000	Weak transcription	HSMM	muscle
36	chr4:144303200-144304800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:144303200-144305000	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:144303200-144305600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:144303200-144305600	Weak transcription	Pancreas	Pancrea
40	chr4:144303200-144308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
42	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:144303200-144317800	Weak transcription	Gastric	stomach
44	chr4:144303400-144304600	Enhancers	Fetal Heart	heart
45	chr4:144303400-144308600	Weak transcription	HepG2	liver
46	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
49	chr4:144303800-144304600	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr4:144303800-144304800	Enhancers	Brain Substantia Nigra	brain

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