Variant report

Variant	rs9992969
Chromosome Location	chr4:144098787-144098788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144094488..144096347-chr4:144097558..144099799,2	MCF-7	breast:
2	chr4:144097632..144100822-chr4:144104140..144107231,5	MCF-7	breast:
3	chr4:144096235..144099412-chr4:144099530..144102386,3	K562	blood:
4	chr4:144085101..144086680-chr4:144098619..144100962,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250326	Chromatin interaction
ENSG00000170185	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10003936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10007068	1.00[EUR][1000 genomes]
rs10008314	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021800	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027917	1.00[EUR][1000 genomes]
rs10050163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519676	1.00[EUR][1000 genomes]
rs11931764	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936087	1.00[EUR][1000 genomes]
rs11947101	1.00[ASN][1000 genomes]
rs17017089	1.00[EUR][1000 genomes]
rs28375333	1.00[EUR][1000 genomes]
rs28412476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478042	1.00[EUR][1000 genomes]
rs28507672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28514400	1.00[EUR][1000 genomes]
rs28536468	1.00[EUR][1000 genomes]
rs28549779	1.00[EUR][1000 genomes]
rs28562579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28565503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605749	1.00[EUR][1000 genomes]
rs28636716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28655338	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28684892	1.00[EUR][1000 genomes]
rs28689042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28875577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28989231	1.00[ASN][1000 genomes]
rs300922	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3196542	1.00[EUR][1000 genomes]
rs60921637	1.00[EUR][1000 genomes]
rs6822036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825700	1.00[EUR][1000 genomes]
rs6845309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7680827	1.00[ASN][1000 genomes]
rs7683255	1.00[EUR][1000 genomes]
rs9996641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144088400-144099000	Weak transcription	Aorta	Aorta
2	chr4:144095000-144099000	Weak transcription	Left Ventricle	heart
3	chr4:144096600-144104800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:144096800-144104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:144097600-144099600	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr4:144097600-144100400	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr4:144097600-144100600	ZNF genes & repeats	Fetal Lung	lung
8	chr4:144097600-144102200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr4:144097600-144103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:144097800-144104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:144097800-144104800	Weak transcription	Psoas Muscle	Psoas
12	chr4:144098000-144102000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:144098000-144104400	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:144098200-144103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:144098400-144103600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:144098400-144104800	Weak transcription	HSMMtube	muscle
17	chr4:144098600-144099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:144098600-144099000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
19	chr4:144098600-144104600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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