Variant report

Variant	rs11947101
Chromosome Location	chr4:143997670-143997671
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10003936	1.00[ASN][1000 genomes]
rs10008314	1.00[ASN][1000 genomes]
rs10021800	1.00[ASN][1000 genomes]
rs10022882	1.00[ASN][1000 genomes]
rs10023498	1.00[ASN][1000 genomes]
rs10050163	1.00[ASN][1000 genomes]
rs11931764	1.00[ASN][1000 genomes]
rs11940820	1.00[AMR][1000 genomes]
rs28412476	1.00[ASN][1000 genomes]
rs28431915	1.00[ASN][1000 genomes]
rs28507672	1.00[ASN][1000 genomes]
rs28562579	1.00[ASN][1000 genomes]
rs28565503	1.00[ASN][1000 genomes]
rs28636716	1.00[ASN][1000 genomes]
rs28655338	1.00[ASN][1000 genomes]
rs28689042	1.00[ASN][1000 genomes]
rs28704746	1.00[ASN][1000 genomes]
rs28875577	1.00[ASN][1000 genomes]
rs300922	1.00[ASN][1000 genomes]
rs6822036	1.00[ASN][1000 genomes]
rs6845309	1.00[ASN][1000 genomes]
rs6846288	1.00[ASN][1000 genomes]
rs7680827	1.00[ASN][1000 genomes]
rs9992969	1.00[ASN][1000 genomes]
rs9996641	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033285	chr4:143884298-144010784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
2	nsv537288	chr4:143884298-144010784	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
3	nsv880176	chr4:143929235-144027729	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143993000-144005000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:143996800-143999600	Enhancers	Fetal Intestine Large	intestine
3	chr4:143997600-143997800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:143997600-143998000	Enhancers	Fetal Intestine Small	intestine
5	chr4:143997600-143998000	Active TSS	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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