The 2.0 version of rSNPBase

Variant report

Variant rs28925889
Chromosome Location chr4:144329776-144329777
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:144312800-144331400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
2 chr4:144312800-144336800 Weak transcription Fetal Muscle Trunk muscle
3 chr4:144313800-144332000 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:144318200-144337000 Weak transcription Fetal Intestine Large intestine
5 chr4:144318200-144362400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr4:144319200-144336600 Weak transcription Fetal Kidney kidney
7 chr4:144321800-144330200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr4:144322200-144334000 Enhancers Fetal Heart heart
9 chr4:144323200-144335800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr4:144323400-144330400 Enhancers HUVEC blood vessel
11 chr4:144324000-144332400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
12 chr4:144324600-144332800 Weak transcription HSMM muscle
13 chr4:144324800-144330200 Enhancers Rectal Smooth Muscle rectum
14 chr4:144324800-144331800 Enhancers Brain Anterior Caudate brain
15 chr4:144324800-144332200 Enhancers Brain Hippocampus Middle brain
16 chr4:144324800-144332400 Enhancers Brain Angular Gyrus brain
17 chr4:144324800-144333200 Weak transcription Fetal Brain Female brain
18 chr4:144324800-144336800 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr4:144325800-144331800 Weak transcription HSMMtube muscle
20 chr4:144326000-144332000 Weak transcription Aorta Aorta
21 chr4:144326000-144336600 Weak transcription Placenta Placenta
22 chr4:144326200-144337200 Weak transcription Primary monocytes fromperipheralblood blood
23 chr4:144326600-144336600 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr4:144326800-144333400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr4:144327200-144337200 Weak transcription Fetal Intestine Small intestine
26 chr4:144327400-144332800 Enhancers Brain Substantia Nigra brain
27 chr4:144327600-144329800 Enhancers HUES6 Cell Line embryonic stem cell
28 chr4:144327600-144329800 Enhancers Fetal Lung lung
29 chr4:144327600-144337800 Weak transcription Colonic Mucosa Colon
30 chr4:144327800-144329800 Enhancers HUES48 Cell Line embryonic stem cell
31 chr4:144327800-144332000 Enhancers Brain Inferior Temporal Lobe brain
32 chr4:144327800-144361200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
33 chr4:144327800-144388200 Weak transcription HepG2 liver
34 chr4:144328000-144330000 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr4:144328000-144330000 Weak transcription Left Ventricle heart
36 chr4:144328000-144330000 Weak transcription Psoas Muscle Psoas
37 chr4:144328000-144330000 Weak transcription Right Atrium heart
38 chr4:144328000-144330200 Weak transcription Right Ventricle heart
39 chr4:144328000-144330200 Weak transcription Spleen Spleen
40 chr4:144328000-144332000 Weak transcription Gastric stomach
41 chr4:144328000-144332000 Weak transcription Lung lung
42 chr4:144328000-144332000 Weak transcription Pancreas Pancrea
43 chr4:144328000-144332000 Enhancers Skeletal Muscle Female skeletal muscle
44 chr4:144328000-144332200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr4:144328000-144332600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr4:144328000-144333000 Weak transcription Stomach Mucosa stomach
47 chr4:144328000-144333600 Enhancers Colon Smooth Muscle Colon
48 chr4:144328000-144336400 Weak transcription Duodenum Mucosa Duodenum
49 chr4:144328000-144338600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr4:144328000-144338800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015